Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015860202.1_cds_XP_016514587.1_27023
CDS Infomation

[gene=LOC107831338] [db_xref=GeneID:107831338] [protein=ATP-dependent DNA helicase 2 subunit KU80 isoform X2] [protein_id=XP_016514587.1] [location=join(274483..274863,275719..276005,276127..276322,276423..276629,277250..277417,277522..277851,277952..278082,278173..278293)] [gbkey=CDS]
Sequence

ATGGACATGCTGATTAAAAAGTTTGGACAAACCAACAAGGGGAAGAAACGTCTTTGCCTT
ATTACAAATGCTATTTCTCCCATCAAAGATCCATTTGAAGGAACAAAAGAAGATCAAGTA
AACACCATTGCTACACAGATGGCAGCACAAGGCATGAAGATGGACTGCGTAATTGTTAGA
ATGAAACAAGATTTGGAAATGAATAGGAGAGTTATGAAAGAAAATGATGTTCTATTATCA
GTATTCTCGAATAAATCTTCCTCAAAAATAGTATATGTGGAAAATCCAACTTCTTTGTTA
GGTGCACTTAGAACTCGTAATATATCACCAGTCACGATATACAGAGGCGATTTTGAAATA
AGCTCACAATTGAAGATCAAGGTATGGGTTTACAAGAAAACATCTGAAGAGAAGTTTCCC
ACTCTAAAAAAGTACTCTGAGAAGGCTCCTCCCACAGACAAATTTGCCACTCATGAAATC
AAGGTTGATTACGAATATAAAAGCATAGAAGACCCTAACAAAGTTGTGCCACCAGAACAA
AGGATTAAAGGTTTTCGGTATGGACCTCAAGTAGTTCCTATATCCTCTGCTGAGTGGGAG
GCTGTAAAGTTCAAACCTGAGAAAAGTGTGAAGCTTCTAGGATTCACGGATGCTTCAAAT
ATAATGCGGCATTACTACCTGAAAGATGTAAATATCTTCATAGCCGAACCTGGCAACAAA
AAGGCCATCCTTGCACTTTCTGCTTTGGCAAGGGCAATGAAGGAAATGAACAAAGTAGCA
ATTGTCCGATGTGTATGGAGGCAAGGACAGGGTAATGTTGTTGTTGGGGTCCTAACACCA
AGTGTCTCTGACAAGGATAATGCTCCTGATTCATTTTACTTCAATATTCTTCCCTTTGCT
GAGGATGTTCGGGAGTTCCAGTTTCCTTCTTTCAGCAATCTGCCTTCATCAATGCAGCCA
AATGAAAAGCAACAAGAGGCAGCAGATAAATTGGTTCAGATGTTGGATCTTGCACCACCT
GGAAAACAGGAAATTTTGCCACCTGACTTTACACCTAATCCTGTTCTGGAGCGTTACTAC
CGCTATCTTGACTTGAAGTCAAAGCACCCGGATGCAGCTGTTCCTCCACTTGATGAAACC
CTCAGAAAGATAACAGAACCTGATGTTGAACTTCTTTCTCGACATAAGTCCATCATAGAG
GAATTCCATAGGTCTTTTGAACTAAAAGAGAATCCAAAGCTGAAAAAATCAACTAGAAGA
ATTATGAAAGAGAGACCTCCCGGATCAGATGGGGAAGGAGAAGAGTTCGACAAAGATGCT
GATGCCAAGGCTATTGACTCCATAGGATACTCATCCAAAGACAAAGTTGAGAAAATTGGA
GACATAAATCCTGTTAAAGACTTTGAGGAGATGATGTCTCGAAGAGATAATGCAGGATGG
ATTAATAAGGCCATTCAGGATATGAAAAATAAGACCTTTGATCTTGTGGAGAATTCTTGT
GAAGGGGATACATATGATAAAGCATTGGAATGTTTAGTGGCTCTACGCAGAGGTTGCATC
CTTGAGCAAGAACCAAAGCAGTTCAATGATTTCCTGTGCCACCTGTATAAATTCTGCCAA
GAAAAAGACCTGAGAAATTTTTGTCAATATCTTGCATCTCATGGCATGACCTTGATAACC
AAGACGGAAGCTCCAGACAGTGAAATTCCAGAAGACGAGGCCAGAAGCTTTATGGTCAAG
CCTGAACCTGACTCGCAAAATGTGAAATCAGAGGCTAAAGCAGAGGATGATATTATGAGT
ATATTCCTGGGAGGAAAATAG

Peptide Sequence

PEP ID

XP_016514587.1
PEP Infomation

PREDICTED: ATP-dependent DNA helicase 2 subunit KU80 isoform X2 [Nicotiana tabacum]
Sequence

MDMLIKKFGQTNKGKKRLCLITNAISPIKDPFEGTKEDQVNTIATQMAAQGMKMDCVIVR
MKQDLEMNRRVMKENDVLLSVFSNKSSSKIVYVENPTSLLGALRTRNISPVTIYRGDFEI
SSQLKIKVWVYKKTSEEKFPTLKKYSEKAPPTDKFATHEIKVDYEYKSIEDPNKVVPPEQ
RIKGFRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNIMRHYYLKDVNIFIAEPGNK
KAILALSALARAMKEMNKVAIVRCVWRQGQGNVVVGVLTPSVSDKDNAPDSFYFNILPFA
EDVREFQFPSFSNLPSSMQPNEKQQEAADKLVQMLDLAPPGKQEILPPDFTPNPVLERYY
RYLDLKSKHPDAAVPPLDETLRKITEPDVELLSRHKSIIEEFHRSFELKENPKLKKSTRR
IMKERPPGSDGEGEEFDKDADAKAIDSIGYSSKDKVEKIGDINPVKDFEEMMSRRDNAGW
INKAIQDMKNKTFDLVENSCEGDTYDKALECLVALRRGCILEQEPKQFNDFLCHLYKFCQ
EKDLRNFCQYLASHGMTLITKTEAPDSEIPEDEARSFMVKPEPDSQNVKSEAKAEDDIMS
IFLGGK

Transcript Sequence

Gene sequence data has not been registered.